Isolation and Screening of Soil Chitinolytic Actinobacteria as the Anti-Fungal Producer of Plant Pathogens

Risky Hadi Wibowo, Sipriyadi Sipriyadi, Nisa Rachmania Mubarik, Iman Rusmana, Maggy Thenawidjaya Suhartono

Abstract


Abstract: Chitinolytic actinobacteria are currently more widely used because of their ability as the biological control agents to the pathogenic fungi, especially in horticultural and plantation crops. This research was conducted to obtain isolates of chitinolytic soil actinobacteria from the rhizosphere of the rubber plant (Hevea brasiliensis) area in IPB University. Antifungal activities from these actinobacteria hopely able to inhibit the growth of plant pathogenic fungi in Vitro on chitin agar media. Fusarium oxysporum and Sclerotium rolfsii are used in the inhibition test of chitinolytic actinobacteria. The results successfully obtained 16 isolates of actinobacteria were grew on  Humic Acid Vitamin (HV) agar. It showed that six of 16 actinobacteria isolates were able to produce inhibition zones to the growth of hyphae of pathogenic fungi on potato dextrose agar (PDA). KK-15 and KK-07 isolates were able to produce the largest inhibition percentages in F. oxysporum and S. rolfsii. Based on the chitinolytic index (CI) values, KK-15 and KK-07 isolates produced CI values of 1.25 and 1.5, respectively. The morphological characteristics and Gram staining of both KK-15 and KK-07 isolates are closely relative with Streptomyces sp. 

Abstrak: Bakteri kitinolitik saat ini banyak diteliti karena kemampuannya sebagai agens pengendali hayati jamur patogen khususnya pada tanaman hortikultura dan perkebunan. Penelitian ini dilakukan untuk mendapatkan isolat-isolat bakteri kitinolitik asal tanah dari bagian perakaran tanaman karet (Hevea brasiliensis) di daerah perkebunan karet Institut Pertanian Bogor (IPB). Aktivitas antifungi dari bakteri ini diharapkan  mampu menghambat pertumbuhan jamur patogen tanaman secara in Vitro pada media agar-agar kitin. Fusarium oxysporum dan Sclerotium rolfsii digunakan dalam uji hambat aktinobakteri kitinolitik. Hasil penelitian memperoleh 16 isolat aktinobakteri berhasil diisolasi dengan menggunakan media agar-agar Humic Acid Vitamin (HV), dan dari 16 isolat tersebut, enam isolat mampu menghasilkan zona hambat terhadap pertumbuhan hifa dari kedua jamur patogen pada media Potato Dextrose Agar (PDA) secara in Vitro. Isolat KK-15 dan KK-07 mampu menghasilkan diameter hambatan terbesar pada jamur F. oxysporum dan S. rolfsii. Berdasarkan nilai index kitinolitik (IK), isolat KK-15 dan KK-07 menghasilkan nilai IK sebesar 1,25 dan 1,5 secara berurutan. Karakteristik morfologi dan pewarnaan Gram dari kedua isolat yaitu KK-15 dan KK-07 memiliki kedekatan dengan kelompok Streptomyces spp.


Keywords


Chitinolyitic actinobacteria; chitinolytic index; pathogenic fungi

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References


Agrawal, T., & Kotasthane, A. S. (2012). Chitinolytic assay of indigenous Trichoderma isolates collected from different geographical locations of Chhattisgarh in Central India. SpringerPlus. 1(73), 1-10.

Ali, A. (2009). Skrining dan karakterisasi parsial senyawa antifungi dari actinomycetes asal limbah padat sagu terdekomposisi. Berkala Penelitian Hayati, 14(1), 219-225.

Arias, M. E., Blánquez, A., Hernández, M., Rodríguez, J., Ball, A. S., Jiménez-Morillo, N. T., González-Vila, F. J., & González-Pérez, J. A. (2016). Role of a thermostable laccase produced by Streptomyces ipomoeae in the degradation of wheat straw lignin in solid state fermentation. Elseiver, 122 (7), 202-208. https://doi.org/10.1016/j.jaap.2016.09.023

Beier S., & Bertilsson S. (2013). Bacterial chitin degradation—mechanisms and ecophysiological strategies. Frontiers in Microbiology, 4, 149. https://doi.org/10.3389/fmicb.2013.00149.

Chandrasekar, U., Balakrishnan, S., Duraisamy, G., Manokran, K., Ganesan, R., & Chinthamani, A. (2012). Production and purification of chitinase by Streptomyces sp. from Soil. Journal of Advanced Scientific Research, 3, 25–29.

Chater, K. F. (2016). Recent advances in understanding Streptomyces. F1000 Research 5, 2795. https://doi.org/10.12688/f1000research. 9534.1

Corneliyawati, Massora, Khikmah & Arifin A. S. (2018). Optimalisasi produksi enzim kitinase pada isolat jamur kitinolitik dari sampel tanah rizosfer. Edubiotik, 3(1), 62-69.

Harvey, M. E. L., Brzezinski, R., Beaulieu, C. (2018), Chitinolytic functions in actinobacteria: Ecology, enzymes, and evolution. Applied Microbiology and Biotechnology, 102 (17), 7219–7230. https://doi.org/10.1007/s00253-018-9149-4.

Jholapara, R. J., Mehta, R. S, Bhagwat, A. M., & Sawant, C. S. (2013). Exploring and optimizing the potential of chitinase production by isolated Bacillus spp. International Journal of Pharmaceutical Sciences, 5, 412-418. https:// doi: 10.3923/jm.2016.119.125

Kuddus, S. M., & Ahmad, R. I. Z. (2013). Isolation of novel chitinolytic bacteria and production optimization of extracellular chitinase. Journal of Genetic Engineering and Biotechnology, 11, 39-46.

Matsumoto, A., & Takahashi, Y. (2017). Endophytic actinomycetes: Promising source of novel bioactive compounds. Journal of Antibiotic, 70, 514–519. https:// doi/ 10.1038/ja.2017.20.

Muharni. (2009). Isolasi dan identifikasi bakteri penghasil kitinase dari sumber air panas danau Ranau Sumatera Selatan. Jurusan Biologi FMIPA. Universitas Sriwijaya. Sumatera Selatan. Indonesia. Jurnal Penelitian Sains, 09, 12-15.

Mukhtar, S., Zaheer, A., Aiysha, D., Malik, K. A., Mehnaz, S. (2017). Actinomycetes: A source of industrially important enzymes. Journal of Proteomics and Bioinformatics, 10(12), 316-319. https:// doi: 10.4172/jpb.1000456.

Nagpure, A., Choudhary, B., & Gupta, R. K. (2014). Chitinases: in agriculture and human healthcare. Critical Reviews in Biotechnology, 34, 215–232. https//: doi: 10.3109/07388551.2013.790874.

Nurjasmi, R., & Suryani. (2013). Uji antagonistik actinomycetes asal limbah kulit bawang merah terhadap patogen tanaman. Jurnal Ilmiah Respati Pertanian, 11(2), 718-722.

Pattanapipitpaisal & Kamlandharn, R. (2012). Screening of chitinolytic actinomycetes for biological control of Sclerotium rolfsii stem rot disease of chili. Journal Of Science and Technology, 34(4), 387-393.

Rashad, Y. M., Al-Askar, A. A, Ghoneem, K. M., Wesam, I. A., Saber, Hafez, E. E. (2017). Chitinolytic Streptomyces griseorubens E44G enhances the biocontrol efficacy against Fusarium wilt disease of tomato. Phytoparasitica, 45, 227–237. https//: doi: 10.3389/fmicb.2019.01505.

Veliz, Martinez-Hidalgo, P., & Hirsch, A. M. (2017). Chitinase-producing bacteria and their role in biocontrol. AIMS Microbiology, 3(3), 689-705. https//: doi: 10.3934/microbiol.2017.3.689.

Saranya, N. & Thayumanavan, T. (2013). Production and some properties of chitinase from Pseudomonas putida isolated from fish waste dumping soil. Online International Interdisciplinary Research Journal, 214-223.

Toshy, A. & Kotasthane, A. S. (2012). Chitinolytic assay of indigenous Trichoderma isolates collected from different geographical locations of Chhattisgarh in Central India. Springer Plus, 1(73), 1-10. https//: doi: 10.1186/2193-1801-1-73.

Rozas, D., Gullon, S., & Mellado, R. P. (2015). A novel two-component system involved in the transition to secondary metabolism in streptomyces coelicolor. PLoS One, 7(3), 17- 60. https//: doi: 10.1371/journal.pone.0031760.

Wang, C., Dong, D., Wang, H., Müller, K., Qin, Y., Wang, H., Wu, W. (2016) Metagenomic analysis of microbial consortia enriched from compost: new insights into the role of Actinobacteria in lignocellulose decomposition. Biotechnology for Biofuel, 9 (22), 3-17. https:// doi: 10.1186/s13068-016-0440-2.

Wibowo, R. H., Mubarik, N. R., Rusmana, I., Thenawidjaya, M. (2017). Penapisan dan identifikasi bakteri kitinolitik penghambat pertumbuhan Ganoderma boninense in vitro. Jurnal Fitopatologi Indonesia, 13(3), 105–111. https://doi.org/10.14692/jfi.13.3.105.

Wibowo, R. H., Sipriyadi, Mubarik, N. R., Rusmana, I. (2020). Soil chitinolytic bacteria from Jambi province to produce antifungal of plant pathogens. Jurnal Mangifera Edu, 5(1), 26-37. https://doi.org/10.31943/mangiferaedu

Zinhua, Z., & Liping, Z. (2011). Improvement of an isolation medium for actinomycetes. Modern Applied Science, 5(2). https//: doi: 10.5539/mas.v5n2p124.




DOI: http://dx.doi.org/10.22373/ekw.v6i2.7400

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Copyright (c) 2020 Risky Hadi Wibowo, Sipriyadi, Nisa Rachmania Mubarik, Iman Rusmana, Maggy Thenawidjaya Suhartono

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P-ISSN : 2460-8912
E-ISSN : 2460-8920

ELKAWNIE

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This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.

Elkawnie: Journal of Islamic Science and Technology in 2022. Published by Faculty of Science and Technology in cooperation with Center for Research and Community Service (LP2M), UIN Ar-Raniry Banda Aceh, Aceh, Indonesia.

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